PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.225
Common NameAMTR_s00024p00225650
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 257aa    MW: 29301.8 Da    PI: 7.0885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.225genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-18754148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT+eEd++l +++k +G + W +I+++ g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00024.225  7 KGAWTAEEDQILSQCIKTHGAKKWQSIPAKAGLKRCGKSCRLRWLNYL 54
                                              79********************************************97 PP
2Myb_DNA-binding55.99.7e-1860105148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl
  evm_27.model.AmTr_v1.0_scaffold00024.225  60 RGNISEEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 105
                                               7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.753254IPR017930Myb domain
SuperFamilySSF466892.31E-294101IPR009057Homeodomain-like
SMARTSM007176.9E-15656IPR001005SANT/Myb domain
PfamPF002492.2E-16754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-23861IPR009057Homeodomain-like
CDDcd001672.06E-10954No hitNo description
PROSITE profilePS5129425.84855109IPR017930Myb domain
SMARTSM007173.6E-1759107IPR001005SANT/Myb domain
PfamPF002492.6E-1660105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2562109IPR009057Homeodomain-like
CDDcd001676.74E-1264105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAKNVNKGAW TAEEDQILSQ CIKTHGAKKW QSIPAKAGLK RCGKSCRLRW LNYLRPCIKR  60
GNISEEEEDL IIRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNTYLSKKLK FEKPAEDPKQ  120
RPRPKKQRLE TPTMRDSEPF NMEVSSSNSG HRSNGPSDAE HKISAVQAEN FKLGEDSSHA  180
GLVKDLEVVN FGDSYEVSRE EFSLDWLSNF LEADEEELGF LSSNNYLEEE YRDLIGISPL  240
YSWTSSSFAC TNHNCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2871097108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526119.10.0transcription factor WER
TrEMBLW1PU710.0W1PU71_AMBTC; Uncharacterized protein
STRINGERN112260.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.17e-55myb domain protein 66
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]