PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.331
Common NameAMTR_s00024p00250370, LOC18439524
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 315aa    MW: 34468.8 Da    PI: 5.6516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.331genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10221264755
                                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               ++ ++RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  evm_27.model.AmTr_v1.0_scaffold00024.331 221 IAAKNRRERISERLKILQDLVPNG-----TKVDLVTMLEKAISYVKFLQ 264
                                               5679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-12215272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-12216268No hitNo description
SuperFamilySSF474591.57E-13216275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7221264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTLARESKAT QEANNLIMFQ AYPFHSSTYV SSAGAPPLHP SSLYLGNTFE AQIPFAVTDP  60
TELSNCTDLV MGGSSSSSSE DLEGLGAMLS FTPGDNHSYN RTPWAYPCNS PLIFEQGGGV  120
GDHFSSSIPV ESFRLFSSGD SFFRGEEKER ERSLCLQHKR PYPGEEIKVQ ASKRVCGYSK  180
AMDVDMDMDM DIDMGGDCIP SLLFRKPTKQ RHVPSKDPQS IAAKNRRERI SERLKILQDL  240
VPNGTKVDLV TMLEKAISYV KFLQLQVKVL ATDEFWPAQG GQAPEVGQVK EAIEAILSSH  300
NSKASSSSPS NPTM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849751.10.0transcription factor bHLH83
TrEMBLW1PMU10.0W1PMU1_AMBTC; Uncharacterized protein
STRINGERN113320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-47ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]