PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.271
Common NameAMTR_s00025p00208390
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19128 Da    PI: 6.7703
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.271genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.6e-16648850
                                              HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                    SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                              +r+ tf kR++g+ KKA+E S+LC+++ +++ fs++g l  ++
  evm_27.model.AmTr_v1.0_scaffold00025.271  6 QRNDTFRKRKKGLKKKASEFSILCGVDTCLVSFSPNGDLDIWP 48
                                              5777***********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-5149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.722151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-15458IPR002100Transcription factor, MADS-box
PfamPF003192.2E-16544IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-51328IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-52849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRPNQRNDT FRKRKKGLKK KASEFSILCG VDTCLVSFSP NGDLDIWPED KSTTCMNVVQ  60
RERLSMGNVG VVQKMEEQEV REIERGEMIN PHLLNQLLPC NFPVMNVEPI SMKPSENLGR  120
HDGLYGTSEN LGLHEGVYKA GEMEQFQNVN FGVRPLMGFD PKNTMLTPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11115RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526799.15e-62MADS-box transcription factor 25-like
TrEMBLW1PR941e-122W1PR94_AMBTC; Uncharacterized protein
STRINGERN125571e-122(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11250.13e-08AGAMOUS-like 52
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]