PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.300
Common NameAMTR_s00025p00218200, LOC18440804
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 180aa    MW: 20321.2 Da    PI: 9.2419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.300genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-181666155
                                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                              s ++G+r +k +g+Wv+eIr p+    +  r++lg+++++e+Aa+a++aa  +l+g
  evm_27.model.AmTr_v1.0_scaffold00025.300 16 SVFRGIRMRK-WGKWVSEIRMPK----SqLRIWLGSYDSPEKAARAYDAALYCLRG 66
                                              689*****99.**********84....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-271674No hitNo description
SuperFamilySSF541712.16E-191674IPR016177DNA-binding domain
PfamPF008471.4E-101666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-271774IPR001471AP2/ERF domain
SMARTSM003806.0E-291780IPR001471AP2/ERF domain
PROSITE profilePS5103220.9431774IPR001471AP2/ERF domain
PRINTSPR003671.2E-81829IPR001471AP2/ERF domain
PRINTSPR003671.2E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAKNKVAGKC NFHKKSVFRG IRMRKWGKWV SEIRMPKSQL RIWLGSYDSP EKAARAYDAA  60
LYCLRGSNCH FNFPGDKRPN LPLNFSPSIL DIKAIAARSA SPENFTAEKK QKMASNLSSS  120
ESEQVSPSLS STSEVSESME SSFSSDRDLF RISFPRKDLL ENVECEDSFM DEMKILLDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1418741572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851005.11e-129ethylene-responsive transcription factor ERF015
TrEMBLW1PXI31e-128W1PXI3_AMBTC; Uncharacterized protein
STRINGERN125861e-129(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-33ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]