PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.396
Common NameAMTR_s00025p00247140
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 227aa    MW: 26057.5 Da    PI: 6.304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.396genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.6e-2019107199
                                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                               ffk++    +++++ l +p  f  ++ +k     + +le +sg+ W+v++  +  +g+  +++GWk+Fv
  evm_27.model.AmTr_v1.0_scaffold00025.396  19 FFKIM--LGNFSKQ-LFIPPAFR-HNFKK--IFHEAVLEGPSGNNWNVEV--EEVRGALCFSRGWKKFV 79 
                                               66777..6666665.9*****96.44323..4559***************..***************** PP

                                               HHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                        B3  70 kangLkegDfvvFkldgrsefelvvkvfrk 99 
                                               k++ L++gDf+vF++dg++ f  ++k+f+k
  evm_27.model.AmTr_v1.0_scaffold00025.396  80 KDHSLNDGDFLVFYYDGDTHF--LIKIFNK 107
                                               ****************98888..****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.49316108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-2116110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2217112IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-2218106No hitNo description
SMARTSM010193.5E-1719108IPR003340B3 DNA binding domain
PfamPF023625.6E-1819107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MYQEDRFCVH DEEDGGQSFF KIMLGNFSKQ LFIPPAFRHN FKKIFHEAVL EGPSGNNWNV  60
EVEEVRGALC FSRGWKKFVK DHSLNDGDFL VFYYDGDTHF LIKIFNKTGC EREDAFDVEC  120
FEKHSPVEKN MPDCPLAIVE ASENPLCIAE KQWSPKKWHR TYTSTTSPVT EKQKEEAIQK  180
AQSFRTNCPH FVVPMRCSLV STTFMVVCAL ITQTSMESNG ATESRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526763.11e-155B3 domain-containing protein Os01g0723500-like
TrEMBLW1PRQ51e-170W1PRQ5_AMBTC; Uncharacterized protein
STRINGERN126821e-171(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1256825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-17B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]