PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.413
Common NameAMTR_s00025p00250380, LOC18440920
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 209aa    MW: 23094.5 Da    PI: 10.2648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.413genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-19113147135
                                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                               C+ C+t kTplWR+gp g+k+LCnaCG++y+k g+
  evm_27.model.AmTr_v1.0_scaffold00025.413 113 CADCKTVKTPLWRNGPLGPKSLCNACGIRYKKLGK 147
                                               ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.637107162IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-15107159IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14111153No hitNo description
Gene3DG3DSA:3.30.50.105.1E-16112148IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.12E-16112162No hitNo description
PfamPF003207.8E-17113147IPR000679Zinc finger, GATA-type
PROSITE patternPS003440113138IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MIQGAALRAP TPVYGHSHFK KFWLKKKEIE DAEERLRVVS AQRPKPSYSS IEHSSLTKSV  60
RFSMGKSELD YAFSLSSDNS SDNGASDRKK KEEEETGDLS SISPRTPTPV NACADCKTVK  120
TPLWRNGPLG PKSLCNACGI RYKKLGKKVN ASNGSPRGIK RKDEVEAVED KFWKRRPFLP  180
KKGRVIDRDE KEGAMLLMAL SCGLVAPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851118.11e-152GATA zinc finger domain-containing protein 8
TrEMBLW1PXK41e-151W1PXK4_AMBTC; Uncharacterized protein
STRINGERN126991e-152(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-17GATA transcription factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]