PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.55
Common NameAMTR_s00025p00077440, LOC18440559
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 213aa    MW: 22877.5 Da    PI: 8.4736
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.55genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000136688123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             y+C +C++ Fs++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00025.55 66 YPCAYCPRLFSNSQALGGHQNAH 88
                                             99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-66494No hitNo description
PROSITE profilePS5015711.2196693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASQKSDNSD SRTVTAPSAT TTTTTTTAST GLTTPPSPML DWLHFNSIPK ENEAESSASR  60
NPGNQYPCAY CPRLFSNSQA LGGHQNAHKK ERMATKKALK SKPNASQCLQ NIVPAPPSST  120
MRYVNPYEQA QMQQWAWAHY AAVAHNFSRS NMSGNERGAS ASPLMLNAME VGYNAPGIAP  180
TVSPNDQSRA ETVDLTLKLA SNVEPIDLTL HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850760.11e-157zinc finger protein 8
TrEMBLW1PWZ31e-156W1PWZ3_AMBTC; Uncharacterized protein
STRINGERN123411e-156(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.18e-12C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]