PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00026.137
Common NameAMTR_s00026p00244220, LOC18438635
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 399aa    MW: 45116.2 Da    PI: 5.9195
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00026.137genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093263602155
                                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                               k +yps++e+  LA+++gL+++q+ +WF N+R ++
  evm_27.model.AmTr_v1.0_scaffold00026.137 326 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 360
                                               569*****************************885 PP
2ELK31.44.1e-11280301122
                                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                               ELK++Ll+KYsgyLg+Lk E+s
  evm_27.model.AmTr_v1.0_scaffold00026.137 280 ELKNHLLKKYSGYLGNLKLELS 301
                                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-21136180IPR005540KNOX1
PfamPF037905.3E-23137178IPR005540KNOX1
SMARTSM012562.7E-29187238IPR005541KNOX2
PfamPF037913.3E-24192236IPR005541KNOX2
PROSITE profilePS5121310.72280300IPR005539ELK domain
PfamPF037891.6E-8280301IPR005539ELK domain
SMARTSM011881.1E-5280301IPR005539ELK domain
PROSITE profilePS5007112.779300363IPR001356Homeobox domain
SuperFamilySSF466891.41E-19301375IPR009057Homeodomain-like
SMARTSM003899.5E-13302367IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-28305365IPR009057Homeodomain-like
CDDcd000861.03E-11312364No hitNo description
PfamPF059202.7E-16320359IPR008422Homeobox KN domain
PROSITE patternPS000270338361IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEHHQLNNEN RRGAFIYTTS PFYGGENMEC HGPDTTTTSM MALMTQNQDQ QPQLHQRLMA  60
PLPIHLLRGH ESQSPQSFHL SSQSLKAEPA GFDRVVRSEH YRAHPGEVVA PRVYAMMLQS  120
HEVENGSNNN TNNDDNAIKA KIVAHPQYSS LLEAYMDCQR VGAPPEVVDR LSAISRELET  180
RQHSSASVGA AGSDPELDQF MEAYYDMLVK YREELTRPIQ EATEFLRRIE SELNSISNGS  240
VRLFSSDDKG DGADSSEEDP DGSGGETELP EIDPRAEDRE LKNHLLKKYS GYLGNLKLEL  300
SKKKKKGKLP KDARQTLLSW WDLHYKWPYP SETEKVALAE STGLDQKQIN NWFINQRKRH  360
WKPSEDMPYV VMDAHHSQNA ALYIEGHLVG DGSYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848881.10.0homeotic protein knotted-1 isoform X2
SwissprotO041351e-137KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLW1PKD20.0W1PKD2_AMBTC; Uncharacterized protein
STRINGERN104620.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-120KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]