PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00026.86
Common NameAMTR_s00026p00180130, LOC18438584
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 247aa    MW: 26515.1 Da    PI: 10.6205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00026.86genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19109157355
                                      AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              ++GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g
  evm_27.model.AmTr_v1.0_scaffold00026.86 109 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRG 157
                                              8*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-29108165IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-21108166IPR016177DNA-binding domain
PROSITE profilePS5103222.128108165IPR001471AP2/ERF domain
SMARTSM003804.0E-31108171IPR001471AP2/ERF domain
CDDcd000181.81E-29109164No hitNo description
PfamPF008471.2E-13109157IPR001471AP2/ERF domain
PRINTSPR003673.0E-10109120IPR001471AP2/ERF domain
PRINTSPR003673.0E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALYFSSIPN RPLSDTFGTQ PTGSLEPDLT CLSNSFEPTQ AFFPNPFEPT RPQFLIPFEP  60
TRAHFPNPIE PPSSLEGIAA VVGPKVLFGL TTSPPQALPR RKPAEPRTFR GVRKRPWGRW  120
SAEIRDRIGR CRHWLGTFDT AEEAARAYDS AARRLRGSKA RTNFSIPSAL YIPQPPGGGS  180
SSGPIENRKM PAAAKGRRSC AVVRSVDELV SSAVVQREAG GVGGGGVGLD LRLGVDVAEL  240
RGAAPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-171041641071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848830.11e-176ethylene-responsive transcription factor ERF084
TrEMBLW1PRR71e-175W1PRR7_AMBTC; Uncharacterized protein
STRINGERN104111e-176(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-27ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]