PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00029.4

Common Name

AMTR_s00029p00021500

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB_related

Protein Properties

Length: 160aa MW: 17423 Da PI: 4.7766

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.4	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.1e-10	18	62	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT e ++ + +a + + + +W++Ia++++ g+t ++k ++ evm_27.model.AmTr_v1.0_scaffold00029.4 18 VWTREQEKAFENALAIHSEEsadRWEKIAAEVN-GKTVADIKRHYE 62 7***************99*********.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-5	12	62	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.984	14	69	IPR017884	SANT domain
SMART	SM00717	8.2E-9	15	67	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-11	17	73	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-8	18	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.37E-8	19	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MTIDTVESAA SDKKNSSVWT REQEKAFENA LAIHSEESAD RWEKIAAEVN GKTVADIKRH 60 YELLVEDVNC IESGRVPLPS YSSLDGSTDL AGETGVGKKG AQYASHLQSS DSSPSAKGSS 120 RSDQERRKGI AWTEEEHRYG FLTMVGTSNF SFWSSIEGV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-20	10	87	2	79	RADIALIS
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011624612.1	5e-96	transcription factor SRM1
Swissprot	Q9FNN6	6e-39	SRM1_ARATH; Transcription factor SRM1
TrEMBL	W1PMU3	1e-113	W1PMU3_AMBTC; Uncharacterized protein
STRING	ERN09373	1e-113	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP275	17	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-37	MYB family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00029.4

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]