PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.40
Common NameAMTR_s00029p00050350
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 183aa    MW: 20521 Da    PI: 6.6744
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.40genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-104302148
                                             TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                                             ++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00029.40  4 KPIWSAIATHLP-GRTDNEIKNYWNTHL 30
                                             568*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.76134IPR017930Myb domain
SuperFamilySSF466892.34E-8739IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-13731IPR009057Homeodomain-like
CDDcd001678.92E-8730No hitNo description
PfamPF002491.9E-7730IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MIKKPIWSAI ATHLPGRTDN EIKNYWNTHL RKRLLRDGID PITHLPRFDI GTLLSLLHSN  60
SFSLCNPKPN LHFTSLNPQF PTATNNDIHI NNHSLTPPPS SDFNSQTTPD PQYTLDCSQT  120
MLHPSSMLLP DTHFSATINV PENPFPEMNN GNGRAIAEED SHYWSNLLKF ATEISSNLNS  180
QP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624626.21e-125myb-related protein 308-like
TrEMBLW1PNM61e-129W1PNM6_AMBTC; Uncharacterized protein
STRINGERN094091e-130(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54230.12e-20myb domain protein 49
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]