PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.85
Common NameAMTR_s00029p00092220
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 298aa    MW: 33522.7 Da    PI: 5.8862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.85genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00032032401254
                                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                              R +++ +++  L++l+ +      +K + a++L  +++YIk L
  evm_27.model.AmTr_v1.0_scaffold00029.85 203 RKEKLGDRITALQQLVSPF-----GKTDTASVLLDTIKYIKFL 240
                                              677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.284191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-4201245No hitNo description
Gene3DG3DSA:4.10.280.102.7E-7201255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11201256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGEDTETTTS PEPHKRINWA SDLLEIKRNS GDGLLISGNF SLFEEIENRQ KGFINSHFLA  60
NSSDSMLEFS GHQLLDSSSR SIAREEGLSL RPYLQFFPAS VNQNGSFSSE IPVLFPVIKE  120
EGHVPSMSQD QNGDQLVLFN HTPLWCERQE NEFFRQISGD QVAGKLMEEA ADSDKNQKCI  180
MEAATKRPRM DAPSSQFSTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL LDTIKYIKFL  240
HDQIAVLSHP YMRLNHGRTP ERARDLEEKG QDLRSRGMCL VPVSTTLSVA KEIRPDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2436001e-167AC243600.1 Amborella trichopoda clone AT_SBa0076E21, complete sequence.
GenBankAC2436041e-167AC243604.1 Amborella trichopoda clone AT_SBa0080I10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524943.10.0uncharacterized protein LOC18437607 isoform X1
TrEMBLW1PNR70.0W1PNR7_AMBTC; Uncharacterized protein
STRINGERN094540.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.39e-36bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]