PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00032.103

Common Name

AMTR_s00032p00142260

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

LBD

Protein Properties

Length: 128aa MW: 14128.1 Da PI: 5.9688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00032.103	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.7	4.1e-19	21	74	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e evm_27.model.AmTr_v1.0_scaffold00032.103 21 QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALTQAE 74 799**********************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.4	1	75	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-17	21	72	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MVSVICKWWE WRTDIPGSWH QELPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ 60 IDALQTQLAL TQAEVVQLRM RASMLSSLVG GPMDGSLPPN KHGVHHAKSM FAVEVDQPNL 120 SETLWTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	21	77	57	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	21	77	57	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626627.1	8e-74	LOB domain-containing protein 4
Swissprot	Q9SHE9	5e-25	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	U5CNW8	1e-89	U5CNW8_AMBTC; Uncharacterized protein
STRING	ERN14856	2e-90	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-27	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00032.103

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]