PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00032.24
Common NameAMTR_s00032p00045230
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 233aa    MW: 25207.7 Da    PI: 6.9047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00032.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-0867113755
                                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                              e+Er+RR+++      Lr+llP        +K s ++   +A  YI +Lq
  evm_27.model.AmTr_v1.0_scaffold00032.24  67 EVERQRRSEMAALCVSLRSLLPIeY---LRGKRSTSDQMNQAASYITHLQ 113
                                              79*********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-1152127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.82360112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-761117No hitNo description
Gene3DG3DSA:4.10.280.101.5E-965129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-667113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDLISGDAME FISGDEQLFS PFFLPNLQTQ DGIPTDLDAP PAPESAAANP PGHPAPAGGC  60
RKIPRGEVER QRRSEMAALC VSLRSLLPIE YLRGKRSTSD QMNQAASYIT HLQKKIEELV  120
EVRDNLKRAC KCGFKMSPDP GRGVMEQLEV RECGEGVEVV MGGPRGAACA SRVVGAIEEE  180
SMGLEVVSYV YTTTGDRSFD VVKSRRSARG GGATADIRKI KRQLVQALQP HH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020528526.11e-171transcription factor bHLH118-like
TrEMBLU5D0621e-169U5D062_AMBTC; Uncharacterized protein
STRINGERN147771e-170(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-21bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]