PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00033.166

Common Name

AMTR_s00033p00200970

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB_related

Protein Properties

Length: 63aa MW: 7238.4 Da PI: 10.3611

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00033.166	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	9	54	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde+l+++v+q+G+++W++I ++ + Rt+k+c++rw + evm_27.model.AmTr_v1.0_scaffold00033.166 9 KGPWMPEEDEILLEYVRQHGPRDWSAIRSKGLLPRTGKSCRLRWVN 54 79***********************8876677********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.014	1	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-21	7	61	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.45E-16	7	61	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-12	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	9	54	IPR001005	SANT/Myb domain
CDD	cd00167	1.54E-12	11	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MFDAGAMRKG PWMPEEDEIL LEYVRQHGPR DWSAIRSKGL LPRTGKSCRL RWVNKLNPDV 60 KT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852860.3	2e-38	transcription factor MYB97
Swissprot	Q0JB89	2e-27	MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBL	U5CYV5	1e-38	U5CYV5_AMBTC; Uncharacterized protein
STRING	ERN14327	2e-39	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	2e-25	MYB family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00033.166

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]