PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00033.200
Common NameAMTR_s00033p00221090
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 235aa    MW: 25768.3 Da    PI: 9.9886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00033.200genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-15162198135
                                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                               C++Cg ++  Tpl+Rrgp g+k+LCnaCGl+++ kg+
  evm_27.model.AmTr_v1.0_scaffold00033.200 162 CQHCGISHraTPLMRRGPLGPKSLCNACGLMWATKGT 198
                                               *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.0E-112257IPR010399Tify domain
PROSITE profilePS5132014.8462257IPR010399Tify domain
PfamPF062001.8E-132456IPR010399Tify domain
PROSITE profilePS5101713.01789131IPR010402CCT domain
PfamPF062031.2E-1489130IPR010402CCT domain
SMARTSM004013.3E-7156209IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-10161217No hitNo description
Gene3DG3DSA:3.30.50.103.7E-14161202IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.63E-13161209No hitNo description
PROSITE patternPS003440162189IPR000679Zinc finger, GATA-type
PfamPF003202.1E-13162198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDGDIPSDSG NVPDPNAIIP MRGQGSSQLT LSFQGEVYVF DSVSPEKVQA VLLLLGGREI  60
PSALSAMPLS SHQLKGINDL PHRLKLPHRI ASLIRFREKR KERCFEKKIR YTVRKEVALR  120
MQRKRGQFAG KGNPDDPDAA NAGWDSQTWP QDGNEPKHFS KCQHCGISHR ATPLMRRGPL  180
GPKSLCNACG LMWATKGTLK DLSGSKSSNP VVTQNPVDSS EKVEGNVEEM RSNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RKEVALRMQRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852894.21e-174GATA transcription factor 24
RefseqXP_011626420.11e-174GATA transcription factor 24
RefseqXP_011626421.11e-174GATA transcription factor 24
RefseqXP_011626422.11e-174GATA transcription factor 24
SwissprotQ8H1G01e-76GAT28_ARATH; GATA transcription factor 28
TrEMBLU5CMJ31e-173U5CMJ3_AMBTC; Uncharacterized protein
STRINGERN143611e-174(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-66ZIM-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]