PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00033.35
Common NameAMTR_s00033p00078670
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 340aa    MW: 37781.3 Da    PI: 7.1104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00033.35genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11153200355
                                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+ +Lq
  evm_27.model.AmTr_v1.0_scaffold00033.35 153 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVTQLQ 200
                                              5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.046150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16152215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9154200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.14E-11155204No hitNo description
SMARTSM003533.6E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
SRRRERKSLI SMEISTAKWF SSHAMEDASI VQDYETSCLD DLTMEHIGAA LSQDLHHSDP  60
YSYINNNNTP FFHDQRPTKR CNFGSNSFLS FYSQDPQINS NHNSSFITLK PKNEIKDSNS  120
PKTPSFNGET MSSTLNGNRV SQNPTAKSSS HTQDHIIAER KRREKLSQRF IALSAIVPGL  180
KKMDKASVLG DAIKYVTQLQ ERVKNLEEET AKKTVESAVL VNKSHVYLDD SSSSSSSTSS  240
SSSLSEDDNS GNGVSLPEIE ARVADKSVLI RIHCEKRKGI LAKAIAEVEK FHLYVLNASF  300
MSFASCALDL TLVAQMEEEY SMTAKDLVKA LRLALNEPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14154209863Transcription factor MYC2
5gnj_B2e-14154209863Transcription factor MYC2
5gnj_E2e-14154209863Transcription factor MYC2
5gnj_F2e-14154209863Transcription factor MYC2
5gnj_G2e-14154209863Transcription factor MYC2
5gnj_I2e-14154209863Transcription factor MYC2
5gnj_M2e-14154209863Transcription factor MYC2
5gnj_N2e-14154209863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020528044.10.0transcription factor bHLH25 isoform X1
TrEMBLU5CM450.0U5CM45_AMBTC; Uncharacterized protein (Fragment)
STRINGERN141960.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-62bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]