PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.3
Common NameAMTR_s00036p00021270
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LBD
Protein Properties Length: 164aa    MW: 18325.2 Da    PI: 9.2949
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.11.7e-201811897
                                  DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89
                                            +ap fp +++++f nv++lFG++nv+kl+++  ++ er +am+s+  eA++rardP+ G++g++l+l++++ +
  evm_27.model.AmTr_v1.0_scaffold00036.3  1 MAPFFPPDRMSDFLNVQRLFGVNNVIKLISKFgKPGERAAAMRSIKQEANVRARDPILGSYGIVLELNKHILH 73
                                            59****************************9977888********************************9998 PP

                                  DUF260 90 lkaelall 97
                                            +++ l+ l
  evm_27.model.AmTr_v1.0_scaffold00036.3 74 ARTLLNNL 81
                                            88777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.378185IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-20178IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAPFFPPDRM SDFLNVQRLF GVNNVIKLIS KFGKPGERAA AMRSIKQEAN VRARDPILGS  60
YGIVLELNKH ILHARTLLNN LCQQLTFCRA QHYCHFHSGF SFGTNSMHAP SSHPLLLLPP  120
PAPAPTAAYS LPWLLEDRME QQQQKDFPNA WLTAMVAETP VSM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853821.22e-66LOB domain-containing protein 22
TrEMBLU5D1K81e-118U5D1K8_AMBTC; Uncharacterized protein
STRINGERN152871e-119(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-19LOB domain-containing protein 22
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]