PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.4
Common NameAMTR_s00036p00023770
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LBD
Protein Properties Length: 125aa    MW: 13823.1 Da    PI: 10.8016
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.4genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26067.43.3e-211821898
                                  DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89
                                            +ap fp +++++f nv++lFG+snv+kl+++  +++er +am+s+  eA++rardP+ G++g++l+l++++ +
  evm_27.model.AmTr_v1.0_scaffold00036.4  1 MAPFFPPDRMSDFLNVQRLFGVSNVIKLISKFgKPDERAAAMRSIKQEAKVRARDPILGSYGIVLELNKHILH 73
                                            59****************************9978888********************************9998 PP

                                  DUF260 90 lkaelallk 98
                                            +++ l+ l 
  evm_27.model.AmTr_v1.0_scaffold00036.4 74 ARTLLNNLC 82
                                            887777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.5E-20178IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089115.642185IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAPFFPPDRM SDFLNVQRLF GVSNVIKLIS KFGKPDERAA AMRSIKQEAK VRARDPILGS  60
YGIVLELNKH ILHARTLLNN LCQQLTFCRA QHHRHLHGDS SFGTNSMHAP PPPPLLSQPP  120
PAPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853821.22e-86LOB domain-containing protein 22
TrEMBLU5D4K36e-86U5D4K3_AMBTC; Uncharacterized protein
STRINGERN152889e-87(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-21LOB domain-containing protein 22
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]