PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00037.125
Common NameAMTR_s00037p00221530
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family G2-like
Protein Properties Length: 121aa    MW: 13414 Da    PI: 9.6854
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00037.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.14e-3352105255
                                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                               prlrWt eLH++Fv+ave+LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR+
  evm_27.model.AmTr_v1.0_scaffold00037.125  52 PRLRWTAELHHSFVNAVERLGGQSKATPKLVLQIMDVKGLTIAHVKSHLQMYRS 105
                                               8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.75148108IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-3248107IPR009057Homeodomain-like
SuperFamilySSF466897.17E-1650107IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-2452106IPR006447Myb domain, plants
PfamPF002497.7E-953104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MENSRKRAGS STEEEMETQQ TIKSSSSENN SVGEDSSRPS GSVRQYIRSK MPRLRWTAEL  60
HHSFVNAVER LGGQSKATPK LVLQIMDVKG LTIAHVKSHL QMYRSMKNDD NGNLHAPCDA  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-2053107357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-2053107357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-2053107357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-2053107357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1953107458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524308.14e-41protein PHR1-LIKE 1
RefseqXP_024545718.17e-40protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ700D98e-31MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLU5DAI62e-84U5DAI6_AMBTC; Uncharacterized protein
STRINGERN174133e-85(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-33G2-like family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]