PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00037.19
Common NameAMTR_s00037p00070040
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 467aa    MW: 52759.4 Da    PI: 6.567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00037.19genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05730126
                                             --S---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                             +kt+lC  f+r G+C++  +C+FaHg
  evm_27.model.AmTr_v1.0_scaffold00037.19  7 FKTKLCILFQR-GHCHR-QSCSFAHG 30
                                             69*********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.136632IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-8636IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLERKLFKTK LCILFQRGHC HRQSCSFAHG DTELRRFSGS GSGRWDYRGS DLRDKLDRRH  60
SPYRRLSPGR DRRGRHAFHG QRLVPYDRGY GTSRSPEKES DRRHRKRQPA DGHLSDTSEG  120
LKISADDDSR ERDGNNLDGK DMLEEQLRQA QLDIDMLDDH KNQLEMCLEE KVEEADSLSA  180
RMHELESQLN KEQEDCERMS SKVKKFVKAY MHYIRAQEEL KRTQARLQRL SDQFSMDPLR  240
PTATEEDSSV NIISDVEANN DNLTITRSQA LNHLSPIKNR MHVSQGTSED AKSGNLRKRV  300
RSAGTARAEK LIKLDRSAPK QEKNREAEAA NSTHANHDAD RRLAKENKSN RKKNTWNASP  360
VNSIPADKGH MVPSTSMAAH AMDELIEAVE IDEKSEAAAN CAALEEDLRS LSDTNVDKVG  420
GLGPFRPVPP PAVPPNVYSQ YKGDDEDAEV EVDVEAVADG SEIEIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020530114.10.0zinc finger CCCH domain-containing protein 13 isoform X5
TrEMBLU5D7B10.0U5D7B1_AMBTC; Uncharacterized protein
STRINGERN173070.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP51641215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-44C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]