PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00038.106
Common NameAMTR_s00038p00167360, LOC18442867
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 186aa    MW: 20689.9 Da    PI: 8.9785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00038.106genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-111365155
                                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                                              r+++h e+Er+RR+++ +    Lr+llP+      ++K s ++ +++A  YI + q
  evm_27.model.AmTr_v1.0_scaffold00038.106 13 RKMSHREVERQRRHEMATLCVSLRSLLPHeY---LKGKRSISDQVTQASSYIAHKQ 65
                                              799**************************77...9*****************9966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3951264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.8E-121390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-81381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-71369No hitNo description
PfamPF000101.4E-81365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MANTPASPVS GCRKMSHREV ERQRRHEMAT LCVSLRSLLP HEYLKGKRSI SDQVTQASSY  60
IAHKQKKIRE LIEVRDDLRR GCECKHSVLP DISCGMVEKL EVRELGEGVE VVMGGLSREG  120
GRRCMSCLVG AMEESIGLDV VSCSSSSRGD QWFHVVQSTR KVSGGTEVDI REIKRKLVQA  180
LQRPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853139.11e-131transcription factor bHLH36
TrEMBLU5CN971e-130U5CN97_AMBTC; Uncharacterized protein
STRINGERN146061e-130(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-22bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]