PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00038.2
Common NameAMTR_s00038p00015530, LOC18442766
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 318aa    MW: 35561.5 Da    PI: 4.5919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00038.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000572653051055
                                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                             + R  ri++ + +Lr l+P     +++  +   +Le+Av+Y+k Lq
  evm_27.model.AmTr_v1.0_scaffold00038.2 265 KSRKIRIKKMLMTLRGLVPGG---SDR--DTNGVLEEAVQYMKTLQ 305
                                             568899*************96...344..44599***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.407255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-6265308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-5265306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-4265305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MANKTNVSYS ESSHITYSES SLQLGSATPE SSKLEPSIPT LSLRNESRMV PTINASIGER  60
ASCPPCKGIT SVNKPEKRLI VFDQSREGTI RIVGLTPNLN MENRFGKEEI FDGSQLGLNE  120
GILAVALASL ERIRRERERG ATLMDMMNPI YSPPEEGSCN VWNNKLLEER QDQEREDQER  180
EDIDTLLSSD DEDEVTSDDE EDENEVTTGH SLVKNLGNDE EEQELSTGHW PIENLGKNEE  240
VVDSCGPRKK RRTEGSHGFS DSESKSRKIR IKKMLMTLRG LVPGGSDRDT NGVLEEAVQY  300
MKTLQLKVYP TVKDRNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853035.10.0uncharacterized protein LOC18442766
TrEMBLU5CZD70.0U5CZD7_AMBTC; Uncharacterized protein
STRINGERN145020.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP596855
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]