PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00039.49
Common NameAMTR_s00039p00088760, LOC18444056
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 248aa    MW: 27125 Da    PI: 4.4216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00039.49genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-172675255
                                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              y+GVr++  +g+WvAeIr+p++     r +lg+f t eeAa a++ a +kl+g
  evm_27.model.AmTr_v1.0_scaffold00039.49 26 AYRGVRQRT-WGKWVAEIREPNK---GDRLWLGTFATSEEAALAYDTASRKLYG 75
                                             59****999.**********933...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-122575IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-212683IPR016177DNA-binding domain
PROSITE profilePS5103222.0892683IPR001471AP2/ERF domain
SMARTSM003808.1E-342689IPR001471AP2/ERF domain
CDDcd000181.49E-302784No hitNo description
Gene3DG3DSA:3.30.730.105.1E-302784IPR001471AP2/ERF domain
PRINTSPR003673.7E-102738IPR001471AP2/ERF domain
PRINTSPR003673.7E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAMRSSRGSK KGCMKGKGGP ENALCAYRGV RQRTWGKWVA EIREPNKGDR LWLGTFATSE  60
EAALAYDTAS RKLYGTSARL NLPEFSPFAP KSLISSGGGG NENANVSLAS VSNRNLTTSK  120
SQSEQGALEA KASAAFSEIQ NSCLLQHCSS PVKNFEPYDD ENLFCEDSIL DVDVDADLCP  180
VFKIYCDEEN QRQELLGLQD LECERISDVV HEISAPDFAA DNGGMEAGEE WMNWQEGCDP  240
SHWSWCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182783360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854296.21e-175dehydration-responsive element-binding protein 2C
SwissprotQ8LFR29e-38DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLU5D5Y40.0U5D5Y4_AMBTC; Uncharacterized protein
STRINGERN157630.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-33ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]