PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00039.68
Common NameAMTR_s00039p00112210, LOC18444075
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 259aa    MW: 29707 Da    PI: 7.212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00039.68genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.9e-17179212134
                                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                              C++C t  Tp+WR gp g+ktLCnaCG++y + +
  evm_27.model.AmTr_v1.0_scaffold00039.68 179 CVHCLTQRTPQWRAGPLGPKTLCNACGVRYNSGR 212
                                              ******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-13173223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.976173208IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14177236No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13177210IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.44E-12178235No hitNo description
PfamPF003204.0E-14179212IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDEDISCFSD LFDISDEEIG APIIFHEFGL HQNLDTADQL IFDIFEPQDF PLLQPTSIFD  60
LSDSNKSNEF CPCPENSDFC SGDSHEFIRE NRNFSSDGSH EFSQESGNFD SKDSHEFSGE  120
NCGNMQAEST EKHRKKPVTN FYLKPFIRRR TRSKRRRRAG PALSKLWRGV RGSGEVRRCV  180
HCLTQRTPQW RAGPLGPKTL CNACGVRYNS GRLFPEYRPA DSPTFIREIH SNSHRKIVEM  240
RKKRFQVSVQ LEERSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RTRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854315.10.0GATA transcription factor 14
TrEMBLU5D2Z30.0U5D2Z3_AMBTC; Uncharacterized protein
STRINGERN157820.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-36GATA transcription factor 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]