PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.172
Common NameAMTR_s00040p00180260, LOC18441367
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 142aa    MW: 15867 Da    PI: 9.9783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.172genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-181060155
                                       AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                              sgy+GVr ++ +gr++AeIrd    g +++r +lg+f+tae+Aa+a++a ++k++g
  evm_27.model.AmTr_v1.0_scaffold00040.172 10 SGYTGVRKRP-WGRFAAEIRD----GaHKRRRWLGTFDTAEDAARAYDAEALKIKG 60
                                              89********.**********....8778************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-211070IPR016177DNA-binding domain
CDDcd000181.02E-281070No hitNo description
PfamPF008471.4E-111060IPR001471AP2/ERF domain
PROSITE profilePS5103221.7861168IPR001471AP2/ERF domain
SMARTSM003806.5E-321174IPR001471AP2/ERF domain
PRINTSPR003672.5E-91223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-291269IPR001471AP2/ERF domain
PRINTSPR003672.5E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAGKRQRNGS GYTGVRKRPW GRFAAEIRDG AHKRRRWLGT FDTAEDAARA YDAEALKIKG  60
PKAKTNFPIS QNTLAPGPLF PSSHNAPLQD EGFNPDQFVA EVLQCVEPQT EVIKWFKIWA  120
MAQMEDRETT VSPSNLGAFM W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-19973368ATERF1
3gcc_A6e-19973368ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11535RKRPWGRFAAEIRDGAHKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851548.11e-102ethylene-responsive transcription factor 3
TrEMBLW1PYI01e-101W1PYI0_AMBTC; Uncharacterized protein
STRINGERN131291e-102(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.13e-18ethylene response factor 7
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]