PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00040.213

Common Name

AMTR_s00040p00205710

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Trihelix

Protein Properties

Length: 186aa MW: 19879.9 Da PI: 5.2448

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.213	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.1	2.9e-10	150	185	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW++qe+l L+e+r++m+ ++r++ k+plW+ev++ evm_27.model.AmTr_v1.0_scaffold00040.213 150 RWPRQETLRLLEVRSQMDVKFREATHKGPLWDEVAR 185 8*********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEIGEQYGQP ELQQFLAVRS RFPAIQNPPE ILGSHGFQYQ ALLSSSFSNE REHQKLINPS 60 EFYGLLGDQL SDVHNQSVVL KAQQMITGTT NNNNSNTNVF SESPSSMCGP SSPSSIAKNH 120 GGGGGGGFGG GVIMGGGGEE GEEGGGGCGR WPRQETLRLL EVRSQMDVKF REATHKGPLW 180 DEVAR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006851703.2	1e-132	trihelix transcription factor PTL
TrEMBL	W1PZZ1	1e-132	W1PZZ1_AMBTC; Uncharacterized protein
STRING	ERN13170	1e-133	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8402	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	7e-14	Trihelix family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00040.213

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]