PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00040.86

Common Name

AMTR_s00040p00117430

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NAC

Protein Properties

Length: 259aa MW: 29377.8 Da PI: 4.7155

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.86	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136	2.6e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...kvka...eekewyfFskr 64 p G+rF Pt+eel+++yLk+k++g++ +++++i+ vdiy+++Pw+Lp+ + a + ++w+fF++ evm_27.model.AmTr_v1.0_scaffold00040.86 6 PIGYRFYPTEEELLSFYLKNKLDGNReAQIDRIIPLVDIYSYDPWQLPAraaE--AnigDGEQWFFFVRI 73 89********************996777788***********53342..2444667**** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g r+nr++ sgyWkatg+ v+s+++ ++gl+k+Lvfy+grap g+kt+W m+ey+l evm_27.model.AmTr_v1.0_scaffold00040.86 74 QERETHGGRPNRIAPSGYWKATGTPGYVYSSNNGVIGLRKSLVFYTGRAPYGRKTKWKMNEYKL 137 ************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-46	4	172	IPR003441	NAC domain
PROSITE profile	PS51005	46.837	5	172	IPR003441	NAC domain
Pfam	PF02365	2.9E-21	6	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MPGGFPIGYR FYPTEEELLS FYLKNKLDGN REAQIDRIIP LVDIYSYDPW QLPARAAEAN 60 IGDGEQWFFF VRIQERETHG GRPNRIAPSG YWKATGTPGY VYSSNNGVIG LRKSLVFYTG 120 RAPYGRKTKW KMNEYKLRIV ETNGDDVASS SSHGATTFAV RREMSLCRIY VKSGVLRQFD 180 RRPPVIPAIQ EPGPGPSSST WTENPNQQPT NEMIDDNVSE GLNLDRDEAG TWDPMADDFA 240 YWELMDDEIV NLESWNSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	5	172	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	5	172	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	5	172	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	5	172	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	5	172	20	168	NAC domain-containing protein 19
3swm_B	1e-31	5	172	20	168	NAC domain-containing protein 19
3swm_C	1e-31	5	172	20	168	NAC domain-containing protein 19
3swm_D	1e-31	5	172	20	168	NAC domain-containing protein 19
3swp_A	1e-31	5	172	20	168	NAC domain-containing protein 19
3swp_B	1e-31	5	172	20	168	NAC domain-containing protein 19
3swp_C	1e-31	5	172	20	168	NAC domain-containing protein 19
3swp_D	1e-31	5	172	20	168	NAC domain-containing protein 19
4dul_A	1e-31	5	172	17	165	NAC domain-containing protein 19
4dul_B	1e-31	5	172	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020527255.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	W1PXQ0	0.0	W1PXQ0_AMBTC; Uncharacterized protein
STRING	ERN13043	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-65	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00040.86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]