PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00042.29
Common NameAMTR_s00042p00120080, LOC18431723
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YB
Protein Properties Length: 156aa    MW: 17381.7 Da    PI: 4.376
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00042.29genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.43.7e-231193385
                                    NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatl 74
                                             ++d  lP a + +i+k++lP + ++++da++++ ec +efi +++se+++ c +e+++ti+++ +l al  l
  evm_27.model.AmTr_v1.0_scaffold00042.29 11 KEDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCGKEEKRTIAPEHVLRALEVL 82
                                             68999******************************************************************* PP

                                    NF-YB 75 Gfedyveplkv 85
                                             Gf dy+e++ +
  evm_27.model.AmTr_v1.0_scaffold00042.29 83 GFGDYIEEVYA 93
                                             *******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-398140IPR009072Histone-fold
SuperFamilySSF471137.14E-3612141IPR009072Histone-fold
PfamPF008083.1E-201579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEPMDIVGKS KEDVSLPKAT MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLISSESNE  60
VCGKEEKRTI APEHVLRALE VLGFGDYIEE VYAAYEQHKL ETLDSPKAGK WSSGAEMTEE  120
EALAEQQRMF AEARARMNNG VSIPKQSDSD RSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-371213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841904.11e-111protein Dr1 homolog
RefseqXP_011622414.11e-111protein Dr1 homolog
RefseqXP_020521360.11e-111protein Dr1 homolog
SwissprotP495922e-87NC2B_ARATH; Protein Dr1 homolog
TrEMBLW1P7C11e-110W1P7C1_AMBTC; Uncharacterized protein
STRINGERN035791e-111(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-91nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]