PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00042.36
Common NameAMTR_s00042p00142880
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 226aa    MW: 25195.9 Da    PI: 7.9789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00042.36genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024185205121
                                              EEETTTTEEESSHHHHHHHHH CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                                              y+C  C k+F+++  L  H+ 
  evm_27.model.AmTr_v1.0_scaffold00042.36 185 YECRVCRKRFKSSPALGGHMG 205
                                              99***********99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-8141207No hitNo description
SMARTSM003550.96141163IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-5141165IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369185207IPR007087Zinc finger, C2H2
SMARTSM003550.036185207IPR015880Zinc finger, C2H2-like
PfamPF139129.5E-6185209IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MFGQPRASFS HGVANPLDLE DRLYTDEPIE PLSLTLSLSP YQLNPTILDH LSSSVSLSSY  60
KDNHTTSQPI STTLTLFLPQ QDSSHSALFT DSSTCKQYFG NHTQDLKDVG EYNPITHYFG  120
IGDTQDSQKN GNHVQDFGNG HRCNMCRKSF TSGQAHGGHM TIHREVLSKL NSEQKKNESN  180
GRRFYECRVC RKRFKSSPAL GGHMGAHRSP FNIEASSSKS FFPFM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1P7L61e-167W1P7L6_AMBTC; Uncharacterized protein
STRINGERN035861e-167(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-13C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]