PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00044.164

Common Name

AMTR_s00044p00155390

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

WOX

Protein Properties

Length: 205aa MW: 23084.4 Da PI: 6.3036

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.164	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.9	1.1e-20	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ F + n +ps+++++e++++l ++e++V++WFqNrRa+ k+ evm_27.model.AmTr_v1.0_scaffold00044.164 22 RQRWTPSQMQLQILESIFDQgNGTPSKQKIKEITSELtqhgPISETNVYNWFQNRRARSKR 82 89***************99***************99***************97 PP
2	Wus_type_Homeobox	98.2	6.4e-32	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP++ Q++iLe+++++G tP+k++i++it+eL+++G i+++NV++WFQNr+aR+++kq evm_27.model.AmTr_v1.0_scaffold00044.164 21 ARQRWTPSQMQLQILESIFDQGNGTPSKQKIKEITSELTQHGPISETNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-17	18	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	18	83	IPR001356	Homeobox domain
SMART	SM00389	3.3E-13	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-18	21	86	IPR009057	Homeodomain-like
CDD	cd00086	2.11E-13	22	84	No hit	No description
Pfam	PF00046	2.0E-18	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MRLGNLYCDP SIANGIHKIT ARQRWTPSQM QLQILESIFD QGNGTPSKQK IKEITSELTQ 60 HGPISETNVY NWFQNRRARS KRKQQVHFSS NAESEVETET ESPKEKKAKL DNINSHENQT 120 SRVEDLCFQS PEVSSDGQSM DQLPNKTKCG LQSNDSSKCL NGFGHISFYE NVVSNSNPRV 180 DHLMGHMEDA GSYDPFHTGD GYDM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006855728.3	1e-154	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	8e-60	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	U5D4P9	1e-153	U5D4P9_AMBTC; Uncharacterized protein
STRING	ERN17195	1e-153	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-52	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00044.164

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]