PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00044.181
Common NameAMTR_s00044p00165760, LOC18445546
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Nin-like
Protein Properties Length: 339aa    MW: 38612.5 Da    PI: 10.4974
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.181genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.21e-25211260352
                                    RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                               ++i l+dlsk+F+ p+++A+++L+v+lTvLKr+CR++GI+RWPhRkiksl
  evm_27.model.AmTr_v1.0_scaffold00044.181 211 ASIALSDLSKHFNVPMAEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSL 260
                                               689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.417195280IPR003035RWP-RK domain
PfamPF020427.2E-22213260IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSFATLPLR ALAVFRNVLN EELVKSVHVY LCENGKEITV EREFMFCPNS YKQMTPIPNL  60
VHGSSGFNIH IFNNVGAIVE AIREGQQVGL WLCILLFNSH HPPVSSPLPA LLTISRNPKL  120
KSIPTLANDL QKVSEFRCAI EDEEVNTFDR QESTRVYEFN FFDKSQIAPV VHTVPSPSSF  180
AEGLSKIQHI GNSIPVRNKV WKNRAPTKHV ASIALSDLSK HFNVPMAEAS RNLKVGLTVL  240
KRKCREFGIP RWPHRKIKSL DSLIHDLQDE VKRQERENEA AAKAATKRRK LLERERETIE  300
RRPASEIQSE TKRFRQDVFK RRHKAKALSN KVATSLRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855745.10.0protein RKD5
TrEMBLU5D7170.0U5D717_AMBTC; Uncharacterized protein
STRINGERN172120.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-56RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]