PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00044.81
Common NameAMTR_s00044p00109210
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 141aa    MW: 15912.9 Da    PI: 6.0051
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.81genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-111862446
                                             S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                             WT+ E +l+ +a +++ ++   +W++Ia +++ g+t+ q+k ++ +
  evm_27.model.AmTr_v1.0_scaffold00044.81 18 WTPHENKLFENALAEFDSDtpdRWEKIAYRLP-GKTPFQIKKHYES 62
                                             ********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-101466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-71764IPR009057Homeodomain-like
SuperFamilySSF466897.18E-131770IPR009057Homeodomain-like
PfamPF002492.7E-91763IPR001005SANT/Myb domain
CDDcd001672.30E-91864No hitNo description
PROSITE profilePS500907.2821864IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MCDPLMRWAT SSSSFTDWTP HENKLFENAL AEFDSDTPDR WEKIAYRLPG KTPFQIKKHY  60
ESLVEDVNFI DMGLVPIPSY AHHGLCDDFL VEVSEFQVVP GGGRGGRGGD PERKKGVPWT  120
EDEHSLCSPT NPRKQYKKGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-21984277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627517.12e-90transcription factor DIVARICATA
SwissprotQ8S9H72e-26DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLU5D6S91e-101U5D6S9_AMBTC; Uncharacterized protein
STRINGERN171121e-102(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-27MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]