PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.125
Common NameAMTR_s00045p00127020
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 304aa    MW: 34961 Da    PI: 5.5511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073161185123
                                               EEETTTTEEESSHHHHHHHHHH..T CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                                               + C+ C+k ++  +++++H+++  H
  evm_27.model.AmTr_v1.0_scaffold00045.125 161 FFCELCNKQYKLAMEFEVHLSSydH 185
                                               67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.2E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.39166111IPR000467G-patch domain
PfamPF015858.1E-1667107IPR000467G-patch domain
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDKMGCIVRE PMHGEDKRQQ EREEVYEESL VEDLGDDFYL PINHRPTENL DTDNLEQATL  60
DTQLTSSNLG FRLLQKMGWK GKGLGKDEQG IIEPIRAGIR DPKLGVGKQE QDDFFTAEEN  120
VQRRKLDVEL EETEEHAKKR EVIAEREQKI QTEVKEIRKV FFCELCNKQY KLAMEFEVHL  180
SSYDHNHRKR FKEMREMHGS SNRDERQKRE QLRQEREMAR FAQIVDAQKQ QQQQQQQEVS  240
GVLASSSTTT SATALAVPDE RQTLKFGFSS KATSKTSFGG ITKKPKVAAK VSSIFGDDSD  300
NET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840371.20.0G patch domain-containing protein 8
RefseqXP_011621872.10.0G patch domain-containing protein 8
TrEMBLW1P3870.0W1P387_AMBTC; Uncharacterized protein
STRINGERN020460.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP637078
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]