PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.145
Common NameAMTR_s00045p00141060
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 782aa    MW: 83802.9 Da    PI: 7.133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.145genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16527573455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  evm_27.model.AmTr_v1.0_scaffold00045.145 527 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 573
                                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-20520583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349523572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-17526577No hitNo description
SuperFamilySSF474592.22E-20526596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13527573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17529578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MTKEKWDFAQ PKMTNCSTDL AFVPDHEFVE LLWENGQIVL QGQTSRNRKD ASSSGYSSHP  60
PKTHLNHNSG DAVLPVASKG GRYGTLESVL HDFSSGQASG CPLVQEMKWP DHEFVELLWE  120
NGQIVLQGQT SRNRKDASSS GYSSHPPKTH LNHNSGDAVL PVASKGGRYG TLESVLHDFS  180
SGQASGCPLV QEDEMVPWLN YPLDDSLERD YCSEFFPELS GVNLTPLSKP TNVVVSEKAC  240
NLDTTSHKNL SMEHSSQAPS RLRALQPFNS QQGQPSNPIL RQFPSNTHKS SCGNSSSPGA  300
NPAIGIVNSK TEQPNHGSTR PPQPTHTNLM NFSHFSRPAA LVKANLQSMG MAGRLKNNND  360
KASVTDSNPV ESSIVDSAVV SKSGKTKLDQ QCQASLHPTK AKDISSSPAR EKQSVEEDVM  420
YVEDASTSQN RSPDRTLCPS SSFAASTALG ISESVKAVEP VVASSSVCSG NSGGRVSKEP  480
RHGLKRKVGE QEESGYQSED VEGESVGTRK QATGRSATTK RSRAAEVHNL SERRRRDRIN  540
EKMRALQELI PNCNKVDKAS MLDEAIEYLK TLQLQVQIMS MASGMCMPPM MMTAGMQHMP  600
PPHMTHFSPM GVGMGMGMGI GMGMGMGMLD IGGSPGCPLI PLPSIRGPQI PCSSISGPMG  660
LPGMPGSNLQ MYGMPMARAP FLPFSGFPQA KAVAGPDISA PTSSGAFSEL NPPSSSKDQM  720
QNLISPNVQQ KVTDSQQLEA SNQVISEHSA QPNLVPGHNQ SSQVIGSNRN GVAPNGTTSY  780
D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531536ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520521.10.0transcription factor PIF3
TrEMBLW1P3A70.0W1P3A7_AMBTC; Uncharacterized protein
STRINGERN020660.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-41phytochrome interacting factor 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]