PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00045.195

Common Name

AMTR_s00045p00167910

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

GRAS

Protein Properties

Length: 216aa MW: 23856.1 Da PI: 9.687

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.195	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	28.8	1.5e-09	143	203	1	63
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyka 63 l +lLl+ Ae +++++ +a++lL +sp +p+qRl+++f++AL++r+ r ++ +k+ evm_27.model.AmTr_v1.0_scaffold00045.195 143 LAHLLLSSAEKIANHEYDRAKRLLMMCGSESSPLSNPVQRLVFHFAKALRERVGR--ETGMKS 203 579**************************************************99..444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.1E-7	143	203	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MAFLAPEEQS ESTGSSSTIN TPPHSGSLND QEMVPIADVL AQTDHGTSTN KEKPYPISLA 60 SLKILKSHRE LSRRLSGSSA VKRSTNIGRE RKLGGERKLS IEEVMRIAGG QYLTAGRNLS 120 SPSNPHSLKL FDLTTEDFNN IELAHLLLSS AEKIANHEYD RAKRLLMMCG SESSPLSNPV 180 QRLVFHFAKA LRERVGRETG MKSLKPEYIE REKQI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011621963.1	1e-101	scarecrow-like protein 23
TrEMBL	W1P3F6	1e-155	W1P3F6_AMBTC; Uncharacterized protein
STRING	ERN02116	1e-156	(Amborella trichopoda)

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00045.195

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]