PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00045.197

Common Name

AMTR_s00045p00168010

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

GRAS

Protein Properties

Length: 226aa MW: 25884.1 Da PI: 6.369

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.197	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	177.3	1.1e-54	5	223	154	374
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsle 221 s e++eetg rL +fA++l++pf f+ ++++++e eeL +++++E++aV + l+++l ++ +le evm_27.model.AmTr_v1.0_scaffold00045.197 5 SGERMEETGTRLLNFAKTLNLPFVFKSITVSNVELDMREELfELDREESVAVYAPMVLKTMLIKPRCLE 73 6799**********************999999876666659***************9999999 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 + +++++++l P ++v++e e++hns+sF++rf+e l +ysa fdsl+a + + + +r +Er+++ evm_27.model.AmTr_v1.0_scaffold00045.197 74 K----TIRVIRNLCPYIMVLTEVESKHNSPSFVHRFIEVLFFYSAYFDSLDAFMEAVDPDRLAMERAFM 138 9....************************************************************ PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 g +i+n+va eg+er+ rh +Wr ++++GF++v+l +a + ak +++ + s+ ++e + ++l evm_27.model.AmTr_v1.0_scaffold00045.197 139 GSAIRNMVAGEGEERIIRHVGIDTWRLFFNRVGFEEVELVRDASNLAKVMVKIYRhSESISLEMNGKAL 207 ***************************************************9999****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 + gWk++pL svSaWr evm_27.model.AmTr_v1.0_scaffold00045.197 208 TVGWKGKPLHSVSAWR 223 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.162	1	202	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-52	5	223	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVGDSGERME ETGTRLLNFA KTLNLPFVFK SITVSNVELD MREELFELDR EESVAVYAPM 60 VLKTMLIKPR CLEKTIRVIR NLCPYIMVLT EVESKHNSPS FVHRFIEVLF FYSAYFDSLD 120 AFMEAVDPDR LAMERAFMGS AIRNMVAGEG EERIIRHVGI DTWRLFFNRV GFEEVELVRD 180 ASNLAKVMVK IYRHSESISL EMNGKALTVG WKGKPLHSVS AWRCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-23	9	223	160	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006848944.1	6e-92	scarecrow-like protein 18
Refseq	XP_011621964.1	5e-94	DELLA protein GAIP-like
TrEMBL	W1P2H9	1e-164	W1P2H9_AMBTC; Uncharacterized protein
STRING	ERN02118	1e-165	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2520	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-38	RGA-like 1

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00045.197

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]