PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.66
Common NameAMTR_s00045p00076020, LOC18430087
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 1047aa    MW: 116128 Da    PI: 6.0752
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.66genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.4e-40137214178
                                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                                              +Cqv++C+adl++ak+yhrrhkvCe+h+ka+++ v +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn
  evm_27.model.AmTr_v1.0_scaffold00045.66 137 TCQVDDCQADLNNAKDYHRRHKVCEMHAKATNAPVGQVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHN 206
                                              6********************************************************************* PP

                                              ----S--- CS
                                      SBP  71 errrkkqa 78 
                                              +rrrk+++
  evm_27.model.AmTr_v1.0_scaffold00045.66 207 RRRRKTHP 214
                                              *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-32131199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.47135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-37137217IPR004333Transcription factor, SBP-box
PfamPF031102.1E-29138211IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.05E-6806914IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-4807911IPR020683Ankyrin repeat-containing domain
CDDcd002041.31E-5807915No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MEARIKGRTQ QFYSSGVPEF MLKGKGPVVV EQSRDWDPND WKWDANLFIA TPLSSTAQDC  60
QIKQFFLPGS NNGAGNSGAE EAGKRRRVEA ESNNEEGSLT LKLGEHAYPI LDMEASNCEG  120
KGGKKCKVQG GNGNRSTCQV DDCQADLNNA KDYHRRHKVC EMHAKATNAP VGQVMQRFCQ  180
QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDVVAGG DNLNDERASG LLLISLLKIL  240
SYMHSNSSER TKGQDLLSQL LRNIAGSAGA GALDGMQLAG LLQTSQTLQN VVGTSSGTSS  300
EKEPVMFPNA ISCATGQESS KPSQPTDLAS KGLNYQDSMV RANDQAVTVA APGMPQKVTV  360
TQSCASEAFR AVPFESCKNL WTVKEGILRE AQAGSSMLPI IVQESSLEKQ CVKPNNFDLN  420
SIYNESQDCV VDTMVETNSP DWPSCLVHDP HQISPTQTSG ASDSASDRSP SSSSGDVQSR  480
TDRIVFKLFD KDPSDLPLVL RGQILDWLSH SPTDIESYIR PGCIVLTIYL HLVESMWEEL  540
SSNLSSSLGR LLELSNDNFW RTGWIYATVQ HRIAFIYNGR VMLELPYHSK SNILSVTPFA  600
VAVSAEANFT LKGFNLSHSK TRLLCAYEGN YLNSSSDSTA EENFCEESSE SDEEENTIQS  660
LSITCSFPDI IGGGFIEVED HDLHSGFFPF VVAEQDVCSE IRTLESTIEL SEFDDPKMRA  720
NQVQTKNQVM EFLNEMGWLL RRNQLMSLSN GSDIYDFPLA RFKWLLEFSM ERDWCAVVKK  780
LLDVVFEGKF ELGERSSVEL MLCEVGPLHR AVRRNCRSMV DFLLRYVPTK ISEETVAMRR  840
ELEGKPFLFR PDMIGLAGVT PLHIAASMEG AEGVLDALTD DPGQVGIQAW KNAKDKTGFS  900
PEDYARLRGY TGYIDQVQRK VISQKQAVGH VVLDMSGLLS TPNRAQTKQI DYIRIKLDTK  960
SCQNSDKLTS FNIDKGTTAG HLHYCKLCDK QLAYKNAKRS LLYRPAMLSM VAIAAVCVCV  1020
GLLLKGPPEV IFVFPFRWEL LGYGPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30130211484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840312.10.0squamosa promoter-binding-like protein 1
TrEMBLW1NWH20.0W1NWH2_AMBTC; Uncharacterized protein
STRINGERN019870.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-170squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]