PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.92
Common NameAMTR_s00045p00096080
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 111aa    MW: 12663.2 Da    PI: 4.2134
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.92genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-071558344
                                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                             +WT eE +l+  a +    +   +W+ Ia+ +g +R+++++  ++
  evm_27.model.AmTr_v1.0_scaffold00045.92 15 KWTREENKLFELALAVVDEEnpdRWSNIAAIVG-RRSAEEVEKHY 58
                                             8**********999999988999**********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481862IPR017877Myb-like domain
SMARTSM007172.6E-51264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-51459IPR009057Homeodomain-like
SuperFamilySSF466892.54E-111469IPR009057Homeodomain-like
PfamPF002494.9E-61558IPR001005SANT/Myb domain
CDDcd001671.94E-61558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MCSKIVNETE RPYSKWTREE NKLFELALAV VDEENPDRWS NIAAIVGRRS AEEVEKHYAF  60
LVEDIQRIES DKVPIPDYII PFSQDSVYAE VIFCHVDFSG LLGIGEEQQA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-2116781173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621861.23e-70protein RADIALIS-like 3
SwissprotQ6NNN01e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLW1P2673e-75W1P267_AMBTC; Uncharacterized protein
STRINGERN020134e-76(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-23RAD-like 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]