PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00046.19
Common NameAMTR_s00046p00062600
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 352aa    MW: 39581.2 Da    PI: 5.4596
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00046.19genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.51.9e-3871351128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpkkvka..eekewyfFskrdk 66 
                                              lppGfrF Pt+eelv++yLk+kv++++ + ++  +i+e+diy++eP dL  ++ +  +e++++fF++r  
  evm_27.model.AmTr_v1.0_scaffold00046.19   7 LPPGFRFVPTEEELVSHYLKNKVSETRSPNFNpdIIRELDIYNHEPFDLLGMA-SfpNENQLFFFAERTA 75 
                                              79***********************9955544227**************7332.3236778999998866 PP

                                      NAM  67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                                +  +rk r+t  gyWk  g++++v+s ++ +vg k+tLvf+kgrap+gektdW m+ey l
  evm_27.model.AmTr_v1.0_scaffold00046.19  76 --PIFSRKVRVTGGGYWKVVGRKRPVVSGREGVVGFKTTLVFHKGRAPNGEKTDWRMKEYVL 135
                                              ..5568**********************999*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-455154IPR003441NAC domain
PROSITE profilePS5100544.6777154IPR003441NAC domain
PfamPF023655.9E-218135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGELDGLPPG FRFVPTEEEL VSHYLKNKVS ETRSPNFNPD IIRELDIYNH EPFDLLGMAS  60
FPNENQLFFF AERTAPIFSR KVRVTGGGYW KVVGRKRPVV SGREGVVGFK TTLVFHKGRA  120
PNGEKTDWRM KEYVLASDRD GIRGTHALCH IYLKSPTKKR QVICESSFVQ DGAVTIGACC  180
NDEICYRQQG GTPLPVIWEV KEEEETLIPQ DDELHKLLSE MLDAETGSQT WDALPTTASS  240
SMTNQMAIDE PVQNVINWCP VPFISESVKH GIIQGEWNKM CNRALLDGDY IELNDLDIDY  300
LGQLRLLTGT ASSFGMRKRQ ILSFYLYIGT PHCVCRIECS CDAKCQASLM P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-26713515140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627853.10.0NAC transcription factor 32
TrEMBLU5DBZ90.0U5DBZ9_AMBTC; Uncharacterized protein
STRINGERN179430.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.16e-35NAC-domain protein 101
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]