PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00046.26
Common NameAMTR_s00046p00066610
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 446aa    MW: 48272.1 Da    PI: 5.4955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00046.26genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.9e-16188234455
                                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00046.26 188 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 234
                                              6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-19181243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-20182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-17187238No hitNo description
PfamPF000103.0E-13188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MPFSPSSSSA PSSFSSSFPS QNSDFALAMA AGRAAGFIPQ ANWEAFHHLK TFQPHPSPFL  60
ASSEFSGDNK TLHEQPLRPE FPVLGDFARR NLPLVSSSVG DETAEGTERG VCGTSGLSEA  120
GVSGRQSSIG DQSSPRRDSE PCKKKKAHND NDLDDLDCES EEGQEPSEEM SKPAPSRSST  180
KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML  240
SMKSGINLAP MCMPGQLQSM QLPQICMGFT TENGTLPITM GMGLLPVNQQ DSSSQPSFDL  300
PNISPPSSSL QSLVMPNIPN VIPNSGGCAE TSSFGLDSSQ GLVRPYQLSS PAEDIYRADI  360
LPQQQVDMIQ SVRSTAENQT KTVASSLSMD GQVTVLERAN YLEAFMCVGD KVRPGLPKDV  420
NSQSMVQRLH CSKIERGISN TEPSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6104120.0HE610412.1 Amborella trichopoda mRNA for bHLH transcription factor (SPATULA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292767.10.0transcription factor bHLH23
TrEMBLU5D6S10.0U5D6S1_AMBTC; Uncharacterized protein
STRINGERN179500.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-39bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]