PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00046.72
Common NameAMTR_s00046p00141180
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SRS
Protein Properties Length: 137aa    MW: 14344.3 Da    PI: 4.7675
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00046.72genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70234.46.8e-111021283157
                                   DUF702  31 rgfdCathvkstWvpaakrrerqqqla 57 
                                               gfdCat vkstWvpaa+rrer+ +  
  evm_27.model.AmTr_v1.0_scaffold00046.72 102 PGFDCATDVKSTWVPAARRRERHMAVV 128
                                              59********************76554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.2E-8103128IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAPRRPGEGV PDWDPGSWPP FDLRSVEAGE LCLGFNGGSA FGPSTAGCPP STKATSPFSR  60
TFPWFSSTAL STIPPLPLPA LLVGPPIPIT TSTEVQDLLQ EPGFDCATDV KSTWVPAARR  120
RERHMAVVVT GEGAAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5CXD76e-92U5CXD7_AMBTC; Uncharacterized protein (Fragment)
STRINGERN179961e-92(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.35e-07Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]