PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00048.137
Common NameAMTR_s00048p00183690, LOC18443909
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 477aa    MW: 54330.6 Da    PI: 6.2496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00048.137genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12277319754
                                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                 Er RR+ +N++f++Lr+l+P++     +K + a+i+  A+eYIk+L
  evm_27.model.AmTr_v1.0_scaffold00048.137 277 TTERDRREYLNKKFSTLRSLVPNP-----TKADRASIVGDATEYIKEL 319
                                               67**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-14275335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9277319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-9279323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MYENKFLETQ EPPPPHSTQE TEDSCPTPNS APNLVMGSLE ESLRLLNFSL EDLPQNNVND  60
EAALRMGIQE QIGFELDQEI NSQIIHEVLQ ENNATQLEHH HHNHWDDANV HDMDLHHHHH  120
DHLHHHHQEH QDHQQLPCFN PNSFSNTPYN APDLLNLLHL PKCSSMPFNN SNLKRSSLDI  180
FGEIPSNDAI STSSSMLYDP LHITFPPQPP LLRDLFTTLP HNYHMPSPKG NGYFGVDEKE  240
GTMYQEGGVE GRQYGNTVLE FGRKNSKGKG RGTKPFTTER DRREYLNKKF STLRSLVPNP  300
TKADRASIVG DATEYIKELL RTVDELKILV EKKRCGGDRS KKVKTDGESC VNIENSSSKN  360
PDDQTDRERK FNGSLRSSWL QRTSKEGTLV DVRIVDDEAN IKLTQRKRRN CLLYVSKILD  420
ELQLEIIHVT GANIGDNYIF MFNTKIHEGS CVYASAIASK LMEVVDRQYP PFSPPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854151.10.0transcription factor bHLH91
RefseqXP_020528932.10.0transcription factor bHLH91
TrEMBLU5D5K50.0U5D5K5_AMBTC; Uncharacterized protein
STRINGERN156180.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-78bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]