PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00048.2
Common NameAMTR_s00048p00018580
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SRS
Protein Properties Length: 384aa    MW: 42144.1 Da    PI: 8.4746
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00048.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70226.71.6e-0864107548
                                  DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaak 48 
                                             + +C +CGn a+  C ++ C+ CC      C  hv    v+   
  evm_27.model.AmTr_v1.0_scaffold00048.2  64 KPKCSQCGNVARSRCPFQSCKSCCSRAQNPCYIHVLKGNVTLPD 107
                                             568**********************999******9776666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.3E-666111IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MATVSSPLAP NNNNSNGNPN ANGNGNGNSN SSNIKSESTA STTLRTNLPA TTTTPRPNLR  60
GLNKPKCSQC GNVARSRCPF QSCKSCCSRA QNPCYIHVLK GNVTLPDKVP SSSSPLPDHQ  120
RTDVSSSTAS PKTSQRSNPQ NYYTPFIGAN IPVRSRKPLS RKEIAAINGW RFSKLKEHTD  180
QDIEAENEAF ERYMQNVSLL EEVFSIHPLE PGLDNQSEPA PTSLKKDYDT QKLLSCIKAR  240
IKADPQRGER NKQKLQGLID ARLGKLQSGD SIEEAGEKEP KRTKNGDDKA WFERPLITNG  300
SMDSKARIED ELKACLAMKL QLSGEKPSFL KSENDEIVTG QESKVVNPRS FGVGKLYTEA  360
QVTDDELCNI NAKFSSCHDF EEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020529076.10.0myosin-G heavy chain isoform X1
TrEMBLU5D5440.0U5D544_AMBTC; Uncharacterized protein
STRINGERN154830.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP597255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.17e-61
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]