PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00049.174
Common NameAMTR_s00049p00179390, LOC18441991
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 381aa    MW: 41856.5 Da    PI: 6.9827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00049.174genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-113962326
                                              S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                                              ++ C+f+++tGtCk+G +C+F+H+
  evm_27.model.AmTr_v1.0_scaffold00049.174 39 QPDCSFYMKTGTCKFGMNCRFNHP 62
                                              789********************8 PP
2zf-CCCH28.62.4e-0982105326
                                               S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                               +++C+f+++tGtCk+ + C+F+H+
  evm_27.model.AmTr_v1.0_scaffold00049.174  82 QPECKFYLKTGTCKFKSACRFHHP 105
                                               799********************8 PP
3zf-CCCH382.7e-12128151326
                                               S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                               +++C+f++r G CkyG++C+F+H+
  evm_27.model.AmTr_v1.0_scaffold00049.174 128 EKECPFYMRQGSCKYGENCRFHHP 151
                                               689********************9 PP
4zf-CCCH33.28.9e-11276302127
                                               --S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                               +++++C+++++tG Ck+ ++C+++H++
  evm_27.model.AmTr_v1.0_scaffold00049.174 276 PGEPNCQYYMKTGDCKFRSSCRYNHPK 302
                                               5789*********************96 PP
5zf-CCCH35.32e-11324348226
                                               -S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                               +++ C +++r+G+Ck+G+ C+F H+
  evm_27.model.AmTr_v1.0_scaffold00049.174 324 DQPVCTHYSRYGICKFGPACRFDHS 348
                                               6899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4743664IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-53763IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-93962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-44264IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-479106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.46479107IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-782105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-583107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-485105IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201125153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7126152IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10128151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5131150IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-4275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723275303IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6320348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122322350IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5322349IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4327349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTVSEGNGNG DLEEQILNLK IEDGDGASNS GPYPERSDQP DCSFYMKTGT CKFGMNCRFN  60
HPHGDKQDAF TKKEEFPERI GQPECKFYLK TGTCKFKSAC RFHHPSDRNG SAGKPLLNFL  120
GLPIRLGEKE CPFYMRQGSC KYGENCRFHH PDPTAVSKQV RFSGYPTNAS NESFSPHASA  180
MPHPLGGFWP GAPSEAVPPF INNGASSSYV PPVPSPFPES GWNDYQPSVT PPLVLESHYH  240
PPPRSAPVYH QPNTNNSNSS TNQQQVAVDD VFPERPGEPN CQYYMKTGDC KFRSSCRYNH  300
PKDRVPTSSP MCSFSPMGLP LRPDQPVCTH YSRYGICKFG PACRFDHSLK NAWVSAGGEA  360
GEQEATQEDG TAASPPLSPS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852277.10.0zinc finger CCCH domain-containing protein 12
RefseqXP_020527601.10.0zinc finger CCCH domain-containing protein 12
TrEMBLW1PZX50.0W1PZX5_AMBTC; Uncharacterized protein
STRINGERN137440.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-81C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]