PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00049.247
Common NameAMTR_s00049p00214620, LOC18442064
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 337aa    MW: 37319.1 Da    PI: 5.3006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00049.247genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-183281255
                                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                              +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  evm_27.model.AmTr_v1.0_scaffold00049.247 32 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAARAMRG 81
                                              69*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.71E-303190No hitNo description
SMARTSM003801.5E-333295IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-213290IPR016177DNA-binding domain
PROSITE profilePS5103222.4313289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-293289IPR001471AP2/ERF domain
PfamPF008479.5E-113281IPR001471AP2/ERF domain
PRINTSPR003671.7E-93344IPR001471AP2/ERF domain
PRINTSPR003671.7E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDECKSHHHD STSPCCLKGK KPAAKDPSTA ARYRGVRRRP WGRYAAEIRD PQSKERRWLG  60
TFDTAEEAAC AYDYAARAMR GVKARTNFNY PNTPDFPFHF QSFPSKAPPP PLPLPLPLPP  120
RRYDWLASSS SNGGNRLSTS IEKNQIDMML LQGFVSGYNV APKTEAGNLF SGDFSSCLPQ  180
PISRPESLNL PFLEEPVCEA KVEEARKLPE FDDFSVESPD SGLLQEVIHQ FFPKKSPDEK  240
FGRNLSNIED AAGFRGSDVE EEVIKGLESD HLSMYLDLQR QLQEGGMDKN VVGCDGGFCS  300
QAMGVGGYPA VTEGMMEELI RCPALLDLFA SKLQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1831881371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852350.10.0ethylene-responsive transcription factor ESR1
TrEMBLW1PUX20.0W1PUX2_AMBTC; Uncharacterized protein
STRINGERN138170.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-12DORNROSCHEN-like
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]