PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00051.83
Common NameAMTR_s00051p00204250, LOC18445009
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 188aa    MW: 21450 Da    PI: 9.4844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00051.83genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-1652101255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              +y+G+r +  +g+WvAeIr+p++   r r++lg++ t+  Aa a++ a  +l+g
  evm_27.model.AmTr_v1.0_scaffold00051.83  52 QYRGIRMRT-WGKWVAEIREPKK---RSRIWLGSYSTPIAAAMAYDTAVFYLRG 101
                                              69****998.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-2851110IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1952109IPR016177DNA-binding domain
CDDcd000181.60E-2452110No hitNo description
PfamPF008472.0E-952101IPR001471AP2/ERF domain
SMARTSM003802.4E-3452115IPR001471AP2/ERF domain
PROSITE profilePS5103221.37752109IPR001471AP2/ERF domain
PRINTSPR003671.3E-105364IPR001471AP2/ERF domain
PRINTSPR003671.3E-1091111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDEENSCSAS ASASVWKESE SMMELQQQKH KGKKRSSSLG KEAVKNESER RQYRGIRMRT  60
WGKWVAEIRE PKKRSRIWLG SYSTPIAAAM AYDTAVFYLR GPSAQRNFPE FATEEDCLSD  120
MSADSIRKKA TEVGARVDAL QQNRTHISRR PNLNQEPPPE SEDWFASCAS SSERSQRLRI  180
KELREDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1551109463ATERF1
3gcc_A4e-1551109463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855217.11e-136ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC304e-43RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLU5D2N21e-135U5D2N2_AMBTC; Uncharacterized protein
STRINGERN166841e-136(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.14e-45related to AP2 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]