PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00053.170
Common NameAMTR_s00053p00216970
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 161aa    MW: 17823.1 Da    PI: 9.3407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00053.170genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.13.1e-12120142123
                                               ---SS-EEEEEEE--TT-SS-EE CS
                                      WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                                               ldDgy+WrKYGqK vk+s++prs
  evm_27.model.AmTr_v1.0_scaffold00053.170 120 LDDGYRWRKYGQKAVKNSNYPRS 142
                                               59********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-12106142IPR003657WRKY domain
SuperFamilySSF1182907.59E-10113142IPR003657WRKY domain
PROSITE profilePS5081112.553115142IPR003657WRKY domain
SMARTSM007741.5E-4120154IPR003657WRKY domain
PfamPF031062.5E-8121142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGEEEQNGLV LHANHNLLYS HQNPPLISLN PSLTSPQLQT LNPFPEPNWN ALLAGTLGLG  60
SSQDDGKQIE LSNNHHLSGG GYGGTVIEDN HGIKEKGRAK LRKMSRPRFA FQTRTPNDIL  120
DDGYRWRKYG QKAVKNSNYP RSISLTYAVI NDLLLSLLHI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522200.11e-102probable WRKY transcription factor 43
TrEMBLW1PB751e-113W1PB75_AMBTC; Uncharacterized protein
STRINGERN051731e-114(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.15e-18WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]