PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00054.9
Common NameAMTR_s00054p00036880, LOC18446474
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YC
Protein Properties Length: 260aa    MW: 29304.8 Da    PI: 5.6738
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00054.9genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.81.4e-196861898
                                   NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90
                                            ++++P +rikki++aded+ +i+  +Pvl+ska elf+ +l  r++  + ++  +t++   ++ +v+r ++fd
  evm_27.model.AmTr_v1.0_scaffold00054.9  6 DTRFPASRIKKIMQADEDIGKIALAVPVLVSKALELFLQDLCGRTYEITLQKGAKTMNSLHLKHCVQRYNVFD 78
                                            5789********************************************************************* PP

                                   NF-YC 91 flvdivpr 98
                                            fl div +
  evm_27.model.AmTr_v1.0_scaffold00054.9 79 FLRDIVQK 86
                                            *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-24372IPR009072Histone-fold
SuperFamilySSF471131.71E-19488IPR009072Histone-fold
PfamPF008081.2E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MRKKLDTRFP ASRIKKIMQA DEDIGKIALA VPVLVSKALE LFLQDLCGRT YEITLQKGAK  60
TMNSLHLKHC VQRYNVFDFL RDIVQKVPDL GGSEGIGDDR SILRRRKNLE EDVETDEVKR  120
AKAGIHLMSR RGRGRGGRGR GRGRGRGRVS GRDRIDIENC EDDVTVSTEH DKPCGEGVIL  180
EDETERKENI ASNTTSPTGI NFDLNMHVNE HTTGKQITQD DNHVEYPGWS LPEIGIDTSQ  240
LVHFDKTFEE DEDYDNEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137146RGRGRGRGRG
2137147RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856654.10.0dr1-associated corepressor isoform X1
TrEMBLU5CXS20.0U5CXS2_AMBTC; Uncharacterized protein
STRINGERN181210.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-60nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]