PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.146
Common NameAMTR_s00057p00158210
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 219aa    MW: 24502.5 Da    PI: 7.1302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.146genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-1163106754
                                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                                +Er RR ++N+ + +L+ ++P+ +      K + +ei e++++YI  L
  evm_27.model.AmTr_v1.0_scaffold00057.146  63 VIERTRRCKMNELYTKLQFMIPTmP-----SKATRVEIIEETIKYIGAL 106
                                               58*********************77.....8***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.02E-1052111No hitNo description
PROSITE profilePS5088812.63356106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1159115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-962112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1163115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-864106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.96E-6142191No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-5143214No hitNo description
PROSITE profilePS5167110.295144218IPR002912ACT domain
CDDcd048733.24E-4147215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEEELSSLHL KLMEGYSDAV VPPLTYFQSP VNDPGALASP ENGKFVAKAN LEAKEPKNKE  60
TLVIERTRRC KMNELYTKLQ FMIPTMPSKA TRVEIIEETI KYIGALEKLI KEEESAKKLK  120
DFGIPPNMGG SRDIIMNISG HIASIGIHTR HRPGITSRVF NVFEKLGLDI LTSGISSYDN  180
EIMLTITACI KRTEENNVAA EVVFEKLKHE LLMRICSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5CUA01e-158U5CUA0_AMBTC; Uncharacterized protein
STRINGERN168811e-159(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1384734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-08bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]